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Hi Andrew
I recently had a similar quandry.
Hard drive was there...next boot it was gone...this was a SLAVE IDE with a MASTER SATA.
I found a bios entry buried deep within the bios where one could set the WAIT TIME for the HDD to be recognised....being a speed phreak I set it for 5 seconds....trouble everywhere
Ended up having to set it as 30 seconds and just wait for the MB to come to grips with the world. That was an ASUS M/B but not sure of the model.
Anyway something to look for in case that is causing you the grief.
Good Luck
Baudy!!!
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